Order the MiSeq System

With the MiSeq System you can access focused applications such as targeted resequencing, metagenomics, small genome sequencing, targeted gene expression profiling, and more. MiSeq reagents enable up to 15 Gb of output with 25 million sequencing reads and 2 × 300 bp read lengths.
Select Product(s)
Instrument

MiSeq System

SY-410-1003

Price
 
 

Services

MiSeq Installation and Operational Qualification

SP-103-1006

Price
 
 

MiSeq Performance Qualification

SP-103-1003

Price
 
 

MiSeq Operational Qualification

SP-103-1002

Price
 
 
Accessory Products

MiSeq Disposable Wash Tubes

MS-102-9999

Price
 
 
MiSeq Reagent Kits v2

MiSeq sequencing reagents in pre-filled, ready-to-use cartridges. Micro and nano formats are available for low output applications.

Select Product(s)

MiSeq Reagent Kit v2 (50-cycles)

MS-102-2001

Price
 
 

MiSeq Reagent Kit v2 (300-cycles)

MS-102-2002

Price
 
 

MiSeq Reagent Kit v2 (500-cycles)

MS-102-2003

Price
 
 

20-pack MiSeq Reagent Kit v2 (50-cycles)

MS-102-2021

Price
 
 

20-pack MiSeq Reagent Kit v2 (300-cycles)

MS-102-2022

Price
 
 

20-pack MiSeq Reagent Kit v2 (500-cycles)

MS-102-2023

Price
 
 

MiSeq Reagent Micro Kit v2 (300-cycles)

MS-103-1002

Price
 
 

MiSeq Reagent Nano Kit v2 (300-cycles)

MS-103-1001

Price
 
 

MiSeq Reagent Nano Kit v2 (500-cycles)

MS-103-1003

Price
 
 

TG MiSeq Reagent Nano Kit, v2 (300 cycles)

TG-142-1001

Price
 
 

TG MiSeq Reagent Micro Kit v2 (300 cycles)

TG-142-1002

Price
 
 

TG MiSeq Reagent Kit, v2 (300 cycles)

TG-142-1003

Price
 
 

TG MiSeq Reagent Kit v2 (500 cycles)

TG-142-1013

Price
 
 

TG MiSeq® Reagent Kit v2 (300 cycles) - 20 Pack

TG-142-1022

Price
 
 

TG MiSeq Reagent Nano Kit, v2 (300 cycles)

TG-142-1001

Price
 
 

TG MiSeq Reagent Micro Kit v2 (300 cycles)

TG-142-1002

Price
 
 

Specifications

MiSeq Reagent Kit v3

Optimized chemistry to increase cluster density and read length, and improve sequencing quality scores, compared to earlier MiSeq reagent kit versions.

Select Product(s)

MiSeq Reagent Kit v3 (150-cycle)

MS-102-3001

Price
 
 

MiSeq Reagent Kit v3 (600-cycle)

MS-102-3003

Price
 
 
Illumina Advantage Products

TG MiSeq Reagent Kit v3 (600 cycle)

TG-142-3003

Price
 
 

TG MiSeq® Reagent Kit v3 (150 cycle)

TG-142-3001

Price
 
 

Specifications

Optimized Sequencing Chemistry

You'll need one reagent kit to use the MiSeq System. Each MiSeq Reagent Kit includes a flow cell and the chemistry necessary for a sequencing run. Two versions are currently available: v2 and v3.

Flexible Library Prep Options

The choice of library prep kit depends on your sample type and application. Select one of these recommended kits, or browse all MiSeq-compatible products.

Illumina DNA Prep

A fast, integrated workflow for a wide range of applications, from human whole-genome sequencing to amplicons, plasmids, and microbial species.

Select Product(s)
What products do I need?
Library Prep

Illumina DNA Prep, (M) Tagmentation (24 Samples, IPB)

20060060

Price
 
 

Illumina DNA Prep, (M) Tagmentation (96 Samples, IPB)

20060059

Price
 
 

Index Adapters

Illumina DNA/RNA UD Indexes Set A, Tagmentation (96 Indexes, 96 Samples)

20091654

Price
 
 

Illumina DNA/RNA UD Indexes Set B, Tagmentation (96 Indexes, 96 Samples)

20091656

Price
 
 

Illumina DNA/RNA UD Indexes Set C, Tagmentation (96 Indexes, 96 Samples)

20091658

Price
 
 

Illumina DNA/RNA UD Indexes Set D, Tagmentation (96 Indexes, 96 Samples)

20091660

Price
 
 

IDT® for Illumina® DNA/RNA UD Indexes Set A, Tagmentation (96 Indexes, 96 Samples)

20027213

Price
 
 

IDT® for Illumina® DNA/RNA UD Indexes Set B, Tagmentation (96 Indexes, 96 Samples)

20027214

Price
 
 

IDT® for Illumina® DNA/RNA UD Indexes Set C, Tagmentation (96 Indexes, 96 Samples)

20042666

Price
 
 

IDT® for Illumina® DNA/RNA UD Indexes Set D, Tagmentation (96 Indexes, 96 Samples)

20042667

Price
 
 

Nextera™ DNA CD Indexes (96 Indexes, 96 Samples)

20018708

Price
 
 

Services

Illumina DNA Prep Training

20022900

Accessory Products
What accessories do I need?

Illumina Purification Bead, 100mL

20060057

Price
 
 

Illumina Purification Bead, 400mL

20060058

Price
 
 

Flex Lysis Reagent Kit (96 reactions)

20018706

Price
 
 

Illumina® Free Adapter Blocking Reagent (12 Reactions)

20024144

Illumina® Free Adapter Blocking Reagent (48 Reactions)

20024145

NextSeq PhiX Control Kit

FC-110-3002

Price
 
 

Specifications

TruSeq DNA Nano

Generate whole-genome sequencing libraries and efficiently interrogate samples with limited available DNA.

Select Product(s)
Which products do I need?
Library Prep

TruSeq Nano DNA Low Throughput Library Prep Kit (24 samples)

20015964

Price
 
 

TruSeq Nano DNA High Throughput Library Prep Kit (96 samples)

20015965

Price
 
 

Index Adapters

IDT for Illumina – TruSeq DNA UD Indexes v2 (96 Indexes, 96 Samples)

20040870

Price
 
 

Illumina Advantage Products

TG TruSeq® Nano DNA LT Sample Prep Kit, Set A (24 Samples)

TG-202-1001

Price
 
 

TG TruSeq® Nano DNA LT Sample Prep Kit, Set B (24 Samples)

TG-202-1002

Price
 
 

TG Truseq® Nano DNA Accessory Kit

TG-280-1001

Price
 
 

Specifications

MiSeq Operational Qualification

Verify instrument operation and obtain an audit-ready report from certified Illumina engineers to help meet regulatory requirements.

Select Product(s)

MiSeq® Operational Qualification

SP-103-1002

Price
 
 
MiSeq Performance Qualification

Verify instrument performance and obtain an audit-ready PQ report from certified Illumina engineers to help meet regulatory requirements.

Select Product(s)

MiSeq® Performance Qualification

SP-103-1003

Price
 
 
MiSeq Installation and Operational Qualification

Verify instrument installation and operation, and obtain an audit-ready report from certified Illumina engineers to help meet regulatory requirements.

Select Product(s)

MiSeq® Installation and Operational Qualification

SP-103-1006

Price
 
 

Peace of Mind with Illumina Services

Our service and support teams provide a full suite of solutions, from product support to personalized consulting, to help you make the most of your instrument.

Want to learn more about the MiSeq System or explore additional MiSeq-compatible products?

Frequently Purchased Together

 

If you currently own a MiSeq, you may be eligible for a trade-in to a new NextSeq 1000 or NextSeq 2000. Experience our simplest workflow yet with dry instrumentation, easier run set up, and 6x faster secondary analysis. This program is available for a limited time only. Terms and conditions apply. Fill out the form below to contact a sales representative to see if you are eligible.

Product Literature

MiSeq Brochure

Brochure | PDF 3 MB

Nextera Sample Prep for the MiSeq System

Application Note | PDF < 1 MB

16S Metagenomics Studies with the MiSeq System

Application Note | PDF < 1 MB

Sequencing Library QC on the MiSeq System

Application Note | PDF < 1 MB

Related Products